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Cyclosquamata 

Taxonomic Serial No.: 553122

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Cyclosquamata

TSN 553122

Taxonomy and Nomenclature           Kingdom: Animalia     Taxonomic Rank: Superorder     Synonym(s):       Common Name(s):               Taxonomic Status:       Current Standing: valid             Data Quality Indicators:       Record Credibility Rating: verified - standards met     Global Species Completeness: complete      Latest Record Review: 2004

Taxonomic Hierarchy           Kingdom Animalia  – Animal, animaux, animals        Subkingdom Bilateria            Infrakingdom Deuterostomia               Phylum Chordata  – cords, cordado, chordates                 Subphylum Vertebrata  – vertebrado, vertbrs, vertebrates                    Infraphylum Gnathostomata                        Superclass Actinopterygii  – ray-finned fishes, spiny rayed fishes, poisson pineux, poissons nageoires rayonnes                          Class Teleostei                              Superorder Cyclosquamata        Direct Children:                                Order Aulopiformes  – salmons, aulopiforms

References           Expert(s):       Expert:       Notes:       Reference for:               Other Source(s):       Source:       Acquired:       Notes:       Reference for:               Publication(s):       Author(s)/Editor(s): Nelson, Joseph S.     Publication Date: 1994      Article/Chapter Title:       Journal/Book Name, Vol. No.: Fishes of the World, Third Edition      Page(s): xvii + 600      Publisher: John Wiley and Sons      Publication Place: New York, New York, USA      ISBN/ISSN: 0-471-54713-1      Notes:       Reference for: Cyclosquamata

Geographic Information           Geographic Division:               Jurisdiction/Origin:

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//Array variable to store data returned from SOLR server
var dataArray=[];

/**
* @description: javascript callback function which will be called after asynchronous call to SOLR
* @param: SOLR Data
**/
function on_SubordinateTaxaReturn(data)

$('#results').empty();
var docs = data.facet_counts.facet_pivot.product;
var groupDoc = data.grouped.rankID.groups;
var suboradinateTaxa = 0;
var rank = "";
var verifiedStandardsMet =0;
var verifiedMinStandardsMet = 0;
var unverified = 0;
var unverifiedReview = 0;
var credibility="";
var outTable = "";
var rankName="";
var totalVerifiedStandardsMet=0;
var totalVerifiedMinStandardsMet=0;
var totalUnverified=0;
var arrayIndex=0;
var percentStandardsMet="";
var offSiteSources=[];
//the number of rank objects returned from the solr query
var totalNumberOfRanks = docs.length;
//The rank of the item for which the subordinate taxa is being calculated
var searchTermRank = "90";
var pieChartConfig = [];

dataArray=[];
var dataExists = false;

//HTML Table header
outTable += "";
outTable += "";
outTable += "";
outTable += "

" outTable += " "; outTable += " "; outTable += ""; rank = docs[rankIndex].value; searchTermRank="90"; //Make sure not to include the results for the rank of the search term in the generated results. if(Number(rank) > Number(searchTermRank)) unverified=0; verifiedStandardsMet=0; verifiedMinStandardsMet=0; unverifiedReview=0; for(j=0; j 0) dataExists=true; //keep a running tally of verifiedMinStandardsMet and totalVerifiedMinStandardsMet if(docs[rankIndex].pivot[j].value.trim().toUpperCase() ==="Minimum taxonomic/nomenclature review".toUpperCase()) verifiedMinStandardsMet = docs[rankIndex].pivot[j].count; totalVerifiedMinStandardsMet+=verifiedMinStandardsMet; //keep a running tally of verifiedStandardsMet and totalVerifiedStandardsMet if(docs[rankIndex].pivot[j].value.trim().toUpperCase() ==="TWG standards met".toUpperCase()) verifiedStandardsMet = docs[rankIndex].pivot[j].count; totalVerifiedStandardsMet+=verifiedStandardsMet; //keep a running tally of unverified and totalUnverified if(docs[rankIndex].pivot[j].value.trim().toUpperCase() ==="No review; untreated NODC data".toUpperCase()) unverified=docs[rankIndex].pivot[j].count; totalUnverified+=unverified; //keep a running tally of unverified and totalUnverified if(docs[rankIndex].pivot[j].value.trim().toUpperCase() === "No review; non-peer reviewed source".toUpperCase()) unverifiedReview=docs[rankIndex].pivot[j].count; totalUnverified+=unverifiedReview; percentStandardsMet = docs[rankIndex].pivot[j].value; for(var a=0;a 0) if(rank==groupDoc[a].doclist.docs[0].rankID) rankName=groupDoc[a].doclist.docs[0].rank; break; dataArray[arrayIndex] = new SubordinateTaxa(rank,rankName,verifiedStandardsMet,verifiedMinStandardsMet,unverified+unverifiedReview,percentStandardsMet);; arrayIndex++; } } //END of SOLR data parsing if (dataExists) //SORT DATA based on Rank ID by ascending order dataArray=sortDataByRankID(dataArray,0); for(var arrayNewIndex = 0;arrayNewIndex<dataArray.length;arrayNewIndex++) outTable += generateSubordinateTaxaColumnTD("Subordinate Taxa", dataArray[arrayNewIndex].rankName, dataArray[arrayNewIndex].taxonomicTotal); outTable += ""; //Subordinate Taxa Column outTable += generateSubordinateTaxaColumnTD("Subordinate Taxa", "ALL", (totalVerifiedStandardsMet + totalVerifiedMinStandardsMet + totalUnverified)); outTable += "   "; outTable += " "; outTable += "  Subordinate Taxa"; outTable += "  Rank"; outTable += "  Verified Standards Met "; outTable += "  Verified Min Standards Met"; outTable += "  Unverified"; outTable += " Percent Standards Met"; //Parse SOLR document to get the related data to array for(var rankIndex = 0; rankIndex 0) outTable += " " + dataArray[arrayNewIndex].rankName + ""; //hyperlink the data if(dataArray[arrayNewIndex].standardsMet>0) outTable += generateSubordinateTaxaColumnTD("TWG standards met", dataArray[arrayNewIndex].rankName, dataArray[arrayNewIndex].standardsMet); //just display the data else outTable += " " + dataArray[arrayNewIndex].standardsMet + ""; //hyperlink the data if(dataArray[arrayNewIndex].minStandardsMet>0) outTable += generateSubordinateTaxaColumnTD("Minimum taxonomic/nomenclature review", dataArray[arrayNewIndex].rankName, dataArray[arrayNewIndex].minStandardsMet) //just display the data else outTable += " " + dataArray[arrayNewIndex].minStandardsMet + ""; //hyperlink the data if(dataArray[arrayNewIndex].unverified>0) outTable += generateSubordinateTaxaColumnTD("Unverified", dataArray[arrayNewIndex].rankName, dataArray[arrayNewIndex].unverified) //just display the data else outTable += " " + dataArray[arrayNewIndex].unverified + ""; //Chart should appear in this column outTable += " "; outTable += ""; var configuration = id: 'percentStandardsMet' + dataArray[arrayNewIndex].rankName, data: [["Verified Standards Met", dataArray[arrayNewIndex].standardsMet], ["Verified Min. Standards Met", dataArray[arrayNewIndex].minStandardsMet], ["Unverified", dataArray[arrayNewIndex].unverified] ] ; pieChartConfig.push (configuration); //Generate and Display "All" row of the table: if( (totalVerifiedStandardsMet + totalVerifiedMinStandardsMet + totalUnverified) > 0) outTable += " ALL "; //Verified Standards Met Column if(totalVerifiedStandardsMet>0) outTable += generateSubordinateTaxaColumnTD("TWG standards met", "ALL", totalVerifiedStandardsMet); else outTable += " " + totalVerifiedStandardsMet + "" //Verified Minimum Standards Met Column if(totalVerifiedMinStandardsMet>0) outTable += generateSubordinateTaxaColumnTD("Minimum taxonomic/nomenclature review", "ALL", totalVerifiedMinStandardsMet); else outTable += " " + totalVerifiedMinStandardsMet + "" //Unverified Column if(totalUnverified>0) outTable += generateSubordinateTaxaColumnTD("Unverified", "ALL", totalUnverified); else outTable += " " + totalUnverified + "" //Chart should appear in this column outTable += " percentStandardsMetAll"; outTable += ""; var configuration = id: 'percentStandardsMetAll', data: [ ["Verified Standards Met", totalVerifiedStandardsMet], ["Verified Min. Standards Met", totalVerifiedMinStandardsMet], ["Unverified", totalUnverified] ] ; pieChartConfig.push (configuration); //Data doesn't exist else outTable += "  "; outTable += "   "; outTable += "   "; outTable += ""; outTable += ""; outTable += ""; outTable += ""; outTable += ""; $('#results').prepend(" " + outTable + ""); generateSubordinateTaxaTblHeader(); if (dataExists) generatePieChart(pieChartConfig); } /** * Description: generates a C3 pie chart for a given container and dataset. * @param: configurations: A javascript array that contains objects cotainerName, an array of[data to plot] * @returns none **/ function generatePieChart(pieChartConfig) //generate a chart for each configuration: for (var configIndex = 0; configIndex < pieChartConfig.length; configIndex++) var chartConfiguration = createPieChartConfig("#" + pieChartConfig[configIndex].id, pieChartConfig[configIndex].data); c3.generate(chartConfiguration); /** * Description: builds the column for the subordinate taxa table. This includes building the hyperlink to generate the valid taxa list for the rank. * @param: percentStandardsMet * @param: rankName * @param: column (string) data that is visible to the user as the clickable hyperlink. * @returns a string which defines a table cell in the subordinate taxa table. **/ function generateSubordinateTaxaColumnTD(percentStandardsMet, rankName, columnData) return " " + columnData + ""; /** * @description: function to create SOLR query and return data to be processed **/ function on_searchSubordinateTaxa() var url = ITIS_SOLR+'/?q=hierarchyTSN:(*$553122$*)&group=true&group.field=rankID&rows=-1&fl=rankID,rank&fq=usage:(valid or accepted)&wt=json&facet=true&facet.pivot=!key=productrankID,credibilityRating&facet.pivot.mincount=0&facet.limit=-1&callback=?&json.wrf=on_SubordinateTaxaReturn'; $.getJSON(url); /** * @description: Dynamically generates the Subordinate Taxa Table header. * @param : none * @return: none **/ function generateSubordinateTaxaTblHeader() url = ITIS_SOLR +'/?q=tsn:(553122)&wt=json'; //Generate The Results Header and get the data for the header if $.get(url).done(function(data) var taxaHeading = " " + data.response.docs[0].rank + " " + formatRankName(data.response.docs[0].nameWOInd,data.response.docs[0].rankID); if (hasTaxonAuthor(data.response.docs[0].taxonAuthor) > 0) taxaHeading += " " + formatTaxonAuthor(data.response.docs[0].taxonAuthor) + " contains:"; else taxaHeading += " contains:"; $('#subordinateTaxaTableHeader').html(taxaHeading); ).fail(function() console.error("houston we have a problem generating the initial Subordinate Taxa Table Header."); ).always(function() console.log("always executes. put clean up code in here"); ); $(document).ready(function() //initially generate the table header for the given search generateSubordinateTaxaTblHeader(); //issue a solr query to generate the subordinate taxa table. on_searchSubordinateTaxa(); );    Subordinate Taxa  Rank  Verified Standards Met  Verified Min Standards Met  Unverified Percent Standards Met   LOADING...   Search on:  Any Name or TSN  Common Name  Scientific Name  TSN In: every Animal Plant Fungal Bacteria Protozoa Chromista Archaea  Kingdom exactly for containing starting with ending with     Go to Advanced Search and Report Disclaimer: ITIS taxonomy is based on the latest scientific consensus available, and is provided as a general reference source for interested parties. 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